Biochemistry laboratories - 201
Jean-Yves Sgro -jsgro@wisc.edu
Find this document here (short URL) today: http://go.wisc.edu/64s3bk
*Note*: To see as slides click on **"Gift icon"** at the top right. To revert back to page view click on **"book icon"** when on the first slide.
Hand-out are in HTML format:
Note: other tutorials are at https://bcrf.biochem.wisc.edu/
material at http://swcarpentry.github.io/python-novice-inflammation/
If you are using a different computer you may need to download the data to be analysed again. Skip if done previously !
python-novice-inflammation
.data
.anaconda-navigator
(the correct answer will likely appear before you type it all!return
keyLaunch
for the jupyter notebookIf the navigator starts and closes the set-up is not correct. The work-around to launching jupyter notebook via Terminal is explained in the next slide/section.
IF Starting the Anaconda Navigator does not work launch the exercise notebook by Terminal line command as detailed below.
Terminal
return
keyWithin the Terminal type the following commands after the $ prompt and press return. The first command places the working directory to the area where the data files are located:
$ cd ~/Desktop/python-novice-inflammation/data
$ jupyter notebook
This will start your default web browser (Safari on the iMacs) and list the data files.
Start a new notebook from the top right pull-down menu "New"
The Default or Root options will both start a Python 3.6 session.
Start a new notebook from the top right pull-down menu "New"
The Default or Root options will both start a Python 3.6 session.
By default the new notebook will be called "Untitled".
Use the menu File > Rename..." to change the name of your notebook of your choosing.
Note: Notebooks are "autosaved" on a regular basis. To save "maually" click on the little disk icon below the word File at the top left.
You can annotate your notebook with help of Markdown - see previous handout-II for Markdown reminders and resource links.